Category Archives: evolution

Guillaume’s Mailbag

So,

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I’ve set up Guillaume’s e-mail: guillaume@darwineatscake.com now, and Guillaume confirms that he received the test message that my wife sent to him. You can also reach Dev, Eleonora, Brooke, Todd, iBall, Douchebert, Drillbit, and Tacey.

I can’t promise how quickly or appropriately any of them will respond, as some are much more responsible than others.

Wrinkly fingers for gripping?

So, here’s the latest in adaptationism:

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Hat-tip to Justin Blumenstiel, who is the king of transposable elements, which I think means that every time one of them transposes, they have to tithe to him.

Changizi M, Weber R, Kotecha R, & Palazzo J (2011). Are Wet-Induced Wrinkled Fingers Primate Rain Treads? Brain, behavior and evolution PMID: 21701145

Happy Belated Father’s Day

So, Farther’s day was almost a week ago, but I wanted to share this video, which illustrates all the good-timey ho-down fun that led to your father becoming your father.

Did I just call your mom a ho?  It sure seems like it, doesn’t it?

If you want to try this (or something like it) at home, check out the ideas in this article:

Joseph P. Chinnici,, Joyce W. Yue,, & Kieron M. Torres (2004). Students as “Human Chromosomes” in Role-Playing Mitosis & Meiosis The American Biology Teacher, 66 (1), 35-39

Antibiotic resistance and corporate agriculture

So, over the weekend, Nicholas Kristof wrote a nice piece in the New York Times in which he laid out the basic facts and statistics regarding the cavalier use of antibiotics in agriculture. His column is full of interesting (i.e., depressing) figures, one of the most striking of which is that the agricultural use of antibiotics in the state of North Carolina exceeds the medical use of antibiotics for the entire United States.

Anyway, the basic punchline is this: when someone in your family is hospitalized or killed by some food-borne, antibiotic-resistant pathogen, you can thank the huge agricultural corporations and the millions of lobbyist dollars they have spent blocking food-safety legislation.

Happy eating!

These full-page comics come out badly here on the blog, so to see a more readable version, go to the Darwin Eats Cake website.

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Sørensen SJ, Bailey M, Hansen LH, Kroer N, & Wuertz S (2005). Studying plasmid horizontal transfer in situ: a critical review. Nature reviews. Microbiology, 3 (9), 700-10 PMID: 16138098

Traffic, preterm birth, and adaptationism

So, here’s a thing:

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This relates to a criticism that I made of evolutionary psychology, but which applies to many naive adaptationist arguments: it is easy to come up with a plausible-sounding adaptive explanation of just about anything. In most cases, it is equally easy to come up with an equally plausible-sounding explanation of the exact opposite phenomenon.

Barnett AG, Plonka K, Seow WK, Wilson LA, & Hansen C (2011). Increased traffic exposure and negative birth outcomes: a prospective cohort in Australia. Environmental health : a global access science source, 10 PMID: 21453550

1971 Canadian Evolution Video

So, do you remember 1971? Me neither. As I understand it, everyone was on drugs. And in Canada, they were all on METRIC DRUGS!!

This video is a little on the long side for the 2011 sensibility, but is pretty awesome. There are a couple of the things in particular that I like about it. First, most videos that I have seen illustrate evolution by having organisms transform. You know, like you have the fish who swims to the edge of the land, wriggles out, and grows legs. Unfortunately, I think that can reinforce two surprisingly common misunderstandings about evolution: (1) that it involves organisms changing adaptively during their lifetimes, and (2) that it involves a degree of intentionality.

That’s not so say that those video makers misunderstand the evolutionary process, just that the most common way of presenting the process to a broader audience lends itself to a particular misinterpretation.

In this video, novel forms arise as offspring, often to the noticeable surprise of their parents. Also, some of those novel forms are adaptive, while others are not.

Here’s the second thing. Videos like this always face a challenge: how do you illustrate mating and reproduction without traumatizing the children? This video comes up with some awesome mating procedures, from eyeball things smashing into each other to a system that involves the male blowing into the female’s nose.

Confidential to my wife: I’ve got an idea for later.

More on Nowak et al at the Chronicle

So, an article has just come out this morning in the Chronicle of Higher Education covering the controversy over the Nowak et al Nature paper attacking kin selection. I’ve written about the paper twice previously, once here, providing an xtranormal video dramatization of the issues, and once here, trying to provide some context to explain why so many people had gotten up in arms about this particular paper (as opposed to the hundreds of scientific papers published every year that are equally wrong).

Unfortunately, the article is behind the Chronicle’s paywall, so you may not be able to read it. (I don’t know if they permit the same sorts of work-arounds that the New York Times does.)

The thing that most strikes me in the article comes at the end:

Right now Mr. Nowak is working to understand the mathematics of cancer; previously, he has outlined the mathematics of viruses. It falls within his career mission to “provide a mathematical description where there is none,” he says, a goal at once modest and lofty. He would also like to write a book on the inter­section of religion and science, a publication that would no doubt further endear him to atheists.

He knows that the debate on kin selection is far from over, though he sees the ad hominem attacks as a good sign. “If the argument is now on this level,” he says, “I have won.”

along with this comment from Smayersu

Science is written in the language of mathematics. Why is it that the biologists cry “foul” when the mathematicians and physicists investigate the theory of evolution? The biological community should welcome the help of those who are trained to examine problems from a rigorous mathematical perspective.

Two things.

First, the criticism of Nowak had nothing to do with his providing a mathematical framework. In fact, most of the people who have criticized Nowak are, themselves, mathematical biologists. The issue is that the paper discounts and misrepresents a huge body of mathematical work. In fact, while Nowak has written a number of interesting and original papers, he has also written a number of papers in which he claims to “provide a mathematical description where there is none,” the problem being that in many cases, there actually is a mathematical description. Often quite an old one.

It is as if I were to write a paper that said, “You know who was wrong? Albert Einstein! Because, look, Special Relativity does not work when you incorporate gravity. So I’ve created a new thing that I call “Generalized Relativity.”

Second, it is absolutely true that ad hominem attacks do not constitute legitimate scientific criticism. However, the fact that some of the attacks on Nowak have been ad hominem certainly does not constitute evidence that he is right.

To my mind, the relevance of the ad hominem attacks is this. They reflect a deep sense of frustration on the part of the field towards Nowak and his career success. Nowak has repeatedly violated one of the basic principles of academic scholarship: that you give appropriate credit to previous work. And yet, the academic system has consistently rewarded him over other researchers who put more effort into making sure that they are doing original work and into making sure to credit their colleagues.

It is as if, after publishing my paper on Generalized Relativity, I were to be awarded tens of millions of dollars in grant money and a chair at Harvard, while the legions of physicists pointing out Einstein’s later work were ignored. I’m guessing that I might find myself the subject of some ad hominem attacks, but it would not mean that I was right.

As a colleague of mine commented this morning, “ah, Nowak thinks he’s won because of the ad hominem attacks. by that standard, Donald Trump must be a serious presidential candidate.”

Nowak, M., Tarnita, C., & Wilson, E. (2010). The evolution of eusociality Nature, 466 (7310), 1057-1062 DOI: 10.1038/nature09205

Field Notes on Science and Nature

So, I wanted to draw your attention to a new book called Field Notes on Science and Nature, just published by Harvard University Press.  The book is the result of several years of work by Michael Canfield, who is not only a personal friend from graduate school, but also a really smart and genuinely nice guy.
The book is an exploration of the similarities and differences in how laboratory and field scientists collect and use notes.  It includes excerpts from the notes of a range of researchers, along with essays about how they use those notes.  I haven’t seen the actual book yet, but the website promises a lot of cool eye candy, like this
and this
Although the book has already been printed, Mike is interested in continuing to explore these issues on the web. He is particularly interested in questions of how current grad students and researchers navigate between pen-and-paper notes and other types of technology.
If you or someone you know (a student, a colleague, a frenemy, etc.) might be willing to share some of your notes and experience, you (or they) should drop Mike an e-mail (canfield@fas.harvard.edu) and join in the conversation.
And finally: congratulations, Mike!  I can’t wait to get my hands on a copy of the book!

As opposed to the light of what?

So, most biologists are familiar with the quotation by Theodosius Dobzhansky, “Nothing in biology makes sense except in the light of evolution.” In fact, in my experience, if you go to a biology conference, there’s about a 50% chance that at least one of the speakers will introduce their talk with this line. What is typically not made explicit in these talks is, as opposed to what other light?

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I have most often heard this quotation used when the speaker is talking to an audience of ecologists or molecular / cell biologists. While both of those fields are clearly tied into evolutionary ideas, explicit thought about evolution is often secondary to other considerations, such as accurately describing the behavior of these very complicated systems on much shorter timescales (months or years in ecology, perhaps down to milliseconds in molecular biology). My sense has always been that people pull out this quotation when they get excited about an evolutionary question in their work, but somehow they feel some anxiety about how their colleagues will react. In a practical sense, then, people seem to quote Dobzhansky when they want to ask a why question. The “as opposed to what” part would be the more descriptive what, where, when, and how questions that constitutes the bulk of the work in biology.

Since this is one of those quotations that just floats around the community, what people may not know is that this was actually the title of one of Dobzhansky’s papers. The paper, published in 1973, was written as a critique of anti-evolutionist arguments by creationists. The “as opposed to what” part, then, was originally divine intervention and intelligent design.

Theodosius Dobzhansky circa 1966. Photo via Wikipedia.

The interesting thing about this paper is that it is written from the perspective of a religious man, and the arguments are more theological than scientific or sociological in nature. Dobzhansky himself was a committed member of the Eastern Orthodox Church. He argues that life is God’s creation, but that natural selection is the mechanism that God has chosen.

It is wrong to hold creation and evolution as mutually exclusive alternatives. I am a creationist and an evolutionist. Evolution is God’s, or Nature’s, method of Creation. Creation is not an event that happened in 4004 B. C.; it is a process that began some 10 billion years ago and is still under way.

Dobzhansky then continues with many of the now-familiar arguments for the overwhelming empirical evidence supporting the fact of evolution – in the fossil record, in the patterns of diversity of life, and in the molecular similarities among all species. What strikes me as particularly interesting in the article is the argument that he invokes to defend against claims that God deliberately created patterns that resemble those that would result from an evolutionary process – for example, the claim that God created dinosaur fossils, when no dinosaurs ever existed, or that God made dinosaur fossils appear to be much older than they actually are.

He says that to claim that God arranged things in this way is blasphemous, as it accuses Him of “systematic deceitfulness.” This, in fact, seems to be the core of Dobzhansky’s argument. The evidence is so strong that it admits only two possible explanations: either evolution is true, or God is deceitful. He rejects the latter on the grounds that such a claim would be “as revolting as it is uncalled for.”

Finally, Dobzhansky winds up with a quotation from Pierre Teilhard de Chardin:

Is evolution a theory, a system, or a hypothesis? It is much more – it is a general postulate to which all theories, all hypotheses, all systems must henceforward bow and which they must satisfy in order to be thinkable and true. Evolution is a light which illuminates all facts, a trajectory which all lines of thought must follow – this is what evolution is.

He notes that Teilhard (a Jesuit priest and paleontologist) was a deeply religious man, and that his faith was not at all in conflict with a belief in evolution and natural selection. I reproduce the quote here because it kicks ass.

Theodosius Dobzhansky (1973). Nothing in Biology Makes Sense Except in the Light of Evolution The American Biology Teacher, 35 (3), 125-129