Category Archives: science

Hauser Plagiarism Case Tabled (for the moment)

So, a couple of days ago, Gilbert Harman, Philosophy Professor at Princeton, wrote four pages arguing that Marc Hauser’s 2006 book, Moral Minds: How Nature Designed our Universal Sense of Right and Wrong, plagiarized the work of John Mikhail. I mentioned it and linked to it in my Sunday Linkasaurolophus post.

Since then, the paper has been taken down from Harman’s website.

Apparently, Harman did not intend for the argument to be made public. It was more like brainstorming, a first step at putting together “the case for the prosecution,” as Harman puts it. It was a draft that he had meant to be presented only to a small circle, as Harman explained here:

For the record, my discussion was intended as a draft of a case for the prosecution and not a final verdict on this topic. I thought I was making it available for only a few people in order to get comments, but apparently it has had a somewhat wider audience than I intended. In the light of various comments I have received, I need to rethink the “case”, something I cannot do immediately, so I have removed that version from my web site.

Interestingly, my earlier post received an anonymous comment from someone claiming to be a student of Hauser’s. The comment stated that Harman’s piece was retracted, and that Hauser could not possibly have had a culture of fear in his lab, since he has trained so many successful scientists, and has won awards for teaching and mentoring.

I mention that just to point out two things. First, based on Harman’s own comment, the piece has not been retracted so much as it has been shelved until Harman has more time. When and if he puts something together that he is willing to stand behind in a public forum, it might be less critical of Hauser, or it might be more critical. We’ll just have to wait and see. In any event, I don’t think that the removal of the piece should necessarily be viewed as a repudiation of the original claims. Certainly, it seems reasonable to assume that the facts that Harman presented wil not change, even if his interpretation of them does.

Second, yes, Hauser has a reputation as a gifted communicator, teacher, and mentor. Yes, Hauser has trained a lot of successful scientists. And, I have no doubt that there are people out there who think very highly of him, at least highly enough to anonymously defend him in blog comment threads.

However, none of that is inconsistent with the portrayal of Hauser’s lab presented by other lab members, which paints Hauser as, at best, dismissive impatient, and, at worst, a bit of a bully.

That being said, my use of the phrase “culture of fear” to describe Hauser’s lab may have been a bit over the top.

I’ll keep my ear to the ground, and will post anything new that comes up on the Harman piece. In the meantime, if you’re interested in the whole Hauser saga, David Dobbs wrote several nice posts on it, four of which you can find (in chronological order) here, herehere, and here.

Sunday Linkasaurolophus: September 25, 2011

So, welcome back to Linkasaurolophus.

Remember, it’s like Linkasaurus Rex, but paints me as a knowledgable insider, the kind of person who knows the name of more than one kind of dinosaur. Maybe two. To the other knowledgable insiders, it also implies that these links have a big crest on their head, which they may or may not have been used millions of years ago to play a jaunty tune.

Let’s start with Facebook: TNG

You’ve probably by now experienced the panopticon bar that Facebook introduced this week. The winning commentary on the New Facebook comes from Dan Lyons (NB: not the same Dan Lyons I went to high school with, although he, also, is awesome). Excerpt:

I prepared myself. On Wednesday night I ate a light dinner and went to bed early, in order to get extra sleep for Thursday morning. Nevertheless, 24 hours later, my hands are still shaking. I’m unable to focus. No matter where I am, I am thinking about Facebook and the new, deeper connection that I immediately feel to everyone I know. It’s so deep, so rich and personal and dare I say, intimate, that the effect is almost overwhelming. It’s like Stendhal Syndrome, where you get overwhelmed by looking at a work of art. I am shellshocked. No, even that is too small a word. I sit and gaze upon the Facebook home page and my emotions begin to sweep and swirl. One moment I am elated. Then I’m struck by anxiety and panic, and want to hide under my desk. A minute later I’m sobbing, uncontrollably, at the beauty of what they’ve done. Why, Mark Zuckerberg? Why do you do this to me? To the world? You are not a businessman, not a geek, not an engineer — you are an artist, and your canvas is the human race itself, the collective hive-mind of modernity.

If you’ve not already read it (which you probably have, as it’s been making the rounds) do yourself a favor and read the whole thing here.

And, here’s something to keep in mind when you’re griping about the Facebook changes, and your supercilious friend chastises you, reminding you again that you have no right to complain about a service that is provided to you for free:

Hat tip to Chris Smith, who was the secret inspiration for U2s fifth album, The Joshua Tree.

Also, you should get better friends.

In non-Facebook news:

The estimable John S. Wilkins (no recent relation) put up an excellent, and very broadly accessible answer to the question “What is philosophy?” You should read it.

Neuroskeptic posted a discussion of the Nipah virus, which provided the inspiration for the virus in the movie Contagion. (Actually, Nipah provided only part of the inspiration. The rest was provided by the universal desire to watch Gwyneth Paltrow die a horrible, horrible death).

You’ll recall the case of Marc Hauser, erstwhile Harvard Professor, who was accused of scientific misconduct, including possibly falsifying data. Around here, we like to call him “the man who put the a** in a**ertainment bias.” Well, Princeton Philosophy Professor Gilbert Harman makes an interesting case that Hauser’s 2006 book, Moral Minds: How Nature Designed Our Universal Sense of Right and Wrong, may have plagiarized the work of John Mikhail. Or, as Harman puts it, “When the ideas taken from Mikhail are subtracted from Hauser’s book, it is unclear what of value is left.” You can read about it (about three-and-a-half pages) here.

If I’ve missed anything, perhaps Neutrino Superman can fly around the world, so that I have a chance to retroactively add it.

World’s Best Postdoc! Apply Now!

So, for those of you who are about to finish your PhD, or who have recently finished, or are wrapping up a first (or second) postdoc, here’s an opportunity you shouldn’t pass up.

Applications are now open for Omidyar Fellowships at the Santa Fe Institute. It’s a three-year gig with complete academic freedom. You work on whatever questions you find most interesting, using whatever tools you deem appropriate. And you get to hang out with a bunch of like-minded individuals from all sorts of different fields.

The Santa Fe Institute is highly interdisciplinary. Typically, there are people there doing physics, and biology, and anthropology, and computer science, and linguistics, and on and on. Most of the individual people you would meet there would be actively engaged in more than one of these areas. So, if you’re an interdisciplinary type of person, you should definitely apply.

You should especially apply if you feel that your work is constrained by disciplinary / departmental boundaries in a traditional academic setting, and you want to forge your own path.

The only sort-of constraint is that most of the work that happens there is mathematical / theoretical / computational. There’s no wet-lab space, and math tends to be the lingua franca that allows all of these people with different backgrounds to communicate and work together. That being said, there are people who have successfully managed to do some combination of theoretical and empirical / lab work by spending some of their time at a University or field site.

The major caveat I would raise is that you only want to take one of these positions if you are really ready to function as an independent researcher. You won’t have a traditional advisor, and no one will be looking over your shoulder — although you will have excellent and supportive colleagues and peers.

Here’s a snippet from Galway Kinnel’s The Book of Nightmares, which to me sums up the essence of this fellowship, and the ideals of the Santa Fe Institute:

I long for the mantle
of the great wanderers, who lighted
their steps by the lamp
of pure hunger and pure thirst, 

and whichever way they lurched was the way.

If that resonates with you, submit your application by November 1. Here’s the official flyer. I ran the postdoc program at SFI for about three years, and would by happy to try to answer any questions, but if you want answers that are actually correct, your best best is to contact the program directly.

Senate cuts 5 hours, 24 minutes from NSF budget

So, the Senate panel that covers the NSF has just cut $162 million, or 2.6%, out of its 2012 budget. Based on this 2007 estimate, the Iraq War costs $720 million per day. That makes 5 hours, 24 minutes.

Now, to be fair, the Iraq war is probably a little bit cheaper now than it was then. So maybe we could have saved the NSF budget by bringing our troops home, say, a day earlier.

Alternatively, if our government had not lied to us, and we had never gone into Iraq in the first place, we could have . . .

. . . actually, it’s just too damn depressing thinking of all of the things that we could have done with the money we’ve spent on killing people.

This comes from the awesome Propaganda Remix.

Happy Labor Day from Darwin Eats Cake

So, today is Labor Day here in the US. Todd and Eleonora are celebrating with story-time:

Best URL for sharing: http://www.darwineatscake.com/?id=52
Permanent image URL for hotlinking or embedding: http://www.darwineatscake.com/img/comic/52.jpg

Santa Fe Institute colleague Sam Bowles has pointed out (via Ronda Butler-Villa) that:

“Labor Day” was promulgated (in 1892) to distance America from the worldwide May Day celebrations of workers in all countries. It is a working class holiday that was initiated to commemorate a general strike in Chicago in 1886, and the anarchists who were hanged (after a highly political show trial) shortly thereafter, allegedly for their involvement in the Haymarket affair.

 Another successful instance of the “hey, look at this shiny thing” strategy working perfectly.

Genomic Imprinting at Darwin Eats Cake

So, I’ve posted the new Darwin Eats Cake, which is about genomic imprinting. I tried to do some explaining in the comic, but I suspect that there is not enough information there for the thing to make sense unless you already have at least a passing familiarity with the phenomenon.

If you’re actually interested, I’ve got a set of primers on imprinting that I’ve been working on here. You can find links to them here.

Or you can just forge ahead:

Best URL for sharing: http://www.darwineatscake.com/?id=51
Permanent image URL for hotlinking or embedding: http://www.darwineatscake.com/img/comic/51.jpg

My goals for independent scholarship

So, I’ve already received a number of very thoughtful responses to my previous post, in which I asked for people’s thoughts about the needs of an independent scholar — particularly those needs that could potentially be filled by an outfit like the Ronin Institute. I’ll start sharing those ideas (along with my own thoughts about what is doable) in a couple of days.

In the meantime, I thought that I would share my own goals in starting my own institute. Basically, it is about escaping the constraints of the (university) academic system. Now, that sounds a bit odd when you say it. After all, as far as jobs-with-a-paycheck go, academia provides you with more freedom than most things, in that you have control over both what you do and when you do it.

At least that’s what we all tell each other in grad school.

This recent entry from PhD Comics better sums up the reality on the ground:

The fact is, what you work on as an academic is highly constrained by a number of factors, like what is publishable or fundable. To a certain extent, that is as it should be. You need incentives that encourage people to do high-quality, relevant work. After all, at the end of the day, through whatever mechanism, it is the rest of society that is paying for us to live and eat while we are doing our research.

You may be absolutely fascinated by Heidegger’s early correspondence, and it may well be a worthy subject of the book you’re writing, but it is not unreasonable for society to devote more of its resources to, say, HIV.

The real problem, as I see it, is not the existence of market-style incentives, nor the overall distribution of those incentives, but the way that those incentives are implemented through the bureaucracies of funding agencies and universities.

One key issue is the way that the incentives are channeled through the departmental structure. I think of this in terms of a story that a colleague of mine tells about giving a seminar in a physics department. At the end of the talk, the first comment from the audience was, “That’s really interesting, but it’s not physics.”

(Note that the only appropriate response to such a comment is, “Thank you, and, who the fuck cares?”)

Of course, this problem is not at all limited to physics. Most researchers have, at one time or another, stumbled across an interesting question or collaboration, but have not pursued it the way they might have out of a concern that the work would not be recognized by their department. In many cases, they fear that having an outside interest will actually count against them. This is a widely-acknowledged problem in academia, and is often the motivation for establishing interdisciplinary centers and trans-departmental programs. However, these centers and programs tend to have specific missions, which come with their own constraints and dogmas. And anyway, any academic structure will only be as openminded as the people running it.

The other constraint relates to publication, which is the currency of cultural capital within almost all academic fields. Again, nothing wrong, in principle with requiring people to publish their work, and to have that work scrutinized by their peers. But what about those insights and ideas that don’t lend themselves to whatever the standard publication format is in a particular field? I think that most researchers have also, at one time or another, done an interesting little piece of work that they would like to share, but which is, say, too small to justify a full research paper, or, in some fields, a book. Projects like these may lie dormant on your hard drive for years before finding an outlet, if ever.

My personal situation is exacerbated by the fact that my interests are abnormally diverse. I remember in graduate school, when a lot of people seemed to think that I was some sort of crazy rebel for doing work on two different kinds of theoretical evolutionary biology.

Yes, two different kinds of theoretical evolutionary biology.

In fact, I have interests in neuroscience and behavioral economics, population genetics, game theory, systems biology, philosophy, and linguistics. Beyond that, I write poetry, and this spring I started a webcomic. Finally, I am a husband and a father, both of which I view as deeply more important than any of my academic interests.

There are people who can pull off being a successful university professor while not ignoring their families. There are also professors who manage to pursue some sort of extracurricular interest.

But unless you’re one of those people who only has to sleep like four hours a day, it is nearly impossible to satisfy your department while working across multiple fields, actively pursuing multiple outside interests, and going home at a reasonable hour.

I finally figured out that I was not willing to walk away from any of my other interests, and that I would have to walk away from at least some of them in order to fulfill my obligations to even the most forgiving and open-minded department.

Basically, what I want to do is live a normal, balanced life, and to spend something like 50 or 60 percent of my work time doing things that would be generally recognized as scientific research. Of that “research” bit, only a fraction would fit comfortably within any given department.

The problem is that what I want does not really mesh with the expectations that are placed on you (both institutionally and culturally) within academia.

I am reminded of something that happened way back when I was a biochemistry grad student at the University of Wisconsin. The department organized a sort of career day, where they had people come and talk to us about different career paths. Among others, there were people who were PIs at the university, people working for biotech companies, someone working in forensics, and one guy who was teaching at a small undergraduate college.

The undergraduate teacher explained that the era of the nine-month-a-year academic was over, even at small colleges, as even the smallest colleges now expect you to develop research programs that can involve undergrads and actively pursue grants. However, he said that it did lend itself to living a more balanced life compared with being a PI with a big lab at a major research university.

Then he said this:

“You know, I don’t think anyone has ever been lying on their deathbed and said, ‘Boy, I wish I had published just one more paper.'”

The room suddenly filled with tension, and the organizers quickly hustled him off and introduced the next speaker.

Grad school is about a lot of things: learning a body of knowledge, learning how to perform independent research, etc. But more than all of that, grad school is about being imbued with a set of academic values. This guy, by saying something that is, with just the tiniest bit of perspective, undeniably true, had violated the code. He had undermined the part of our training that was about internalizing the notion that finishing the next experiment / writing the next paper / getting the next grant was more important than anything else going on in our lives.

I suspect that he was not invited back the next year, but his comment has stuck with me. (I’m sorry I can’t recall either his name or school.) I think most of us start of in grad school because we love whatever it is that we’re studying, but then we tend to get caught up in chasing all of the proximate goals (publication, tenure, society membership) that define the academic incentive structure, and many academics lose sight of the fact that there was ever something that excited them so much that they wanted to spend their life studying.

So, that’s my goal. I want to keep my eye on the thing that drew me to academia in the first place. I want to spend my time trying to say things that I believe to be true, recognizing that some truths lend themselves to being expressed as mathematical equations, some as poems, some as comics, and some as rambling blog posts about founding an institute devoted to supporting independent scholarship.

Calling all Ronin

So, last week I posted about my plans to start my own non-profit research institute, to be called the Ronin Institute. Interestingly, I got a handful of notes from people inquiring — with various levels of facetiousness — about joining up. That matches up with my experience of talking to people in person about this plan, where a significant fraction of people ask to join up in a semi-joking sort of way.

In fact, one of my long-term goals for this venture is to create an organization that can help to connect and support scholars who, by choice or by chance, do not have an affiliation with a university or other research institute. Originally, I had viewed that as something that I would start building in a couple of years, after getting the basic place established. However, it seems that even the semi-joking responses point to a genuine desire by a lot of people for something.

I’m not sure exactly what that something is, but I have a couple of guesses.

[I go on here at some length about my guesses, but at the end of the post, I get to the point. If something like the Ronin Institute seems even vaguely appealing to you, send me an e-mail at jon@jonfwilkins.com, and let me know what is appealing and why. If you were to join the Ronin Institute, what would you hope to get from the affiliation?]

The thing about academia is that it requires a certain level of competence at / interest in a variety of activities. I think that most people who go to grad school do it with the idea that their life is career to be about scholarship and research. They usually know that, for most jobs, they will also be expected to teach, which is a plus for some people and a minus for others. These are certainly two of the most important things you do as an academic, but many professors will tell you that this is not what takes up the bulk of their time. Successful academics tend to spend a large fraction of time worrying about raising funding, through grants or donations. In the sciences, being a successful academic also requires being a competent manager, since most science is done in laboratories that include graduate students, postdocs, and technicians. And finally, for all academics, you have to be able to navigate the politics and bureaucracy of the university (national laboratory, pharmaceutical company, think tank, etc.).

I think it’s that last bit that is most surprising to people: the fact that your career depends so heavily on your ability to deal with deans and provosts, and to negotiate the (often quite poisonous) interpersonal dynamics of your department. I’ve known several people who are absolutely brilliant, but who have been marginalized in academia owing to their inability to play the politics game. I’m not talking here about the bullies or budding psychopaths who need to get flushed out. I’m talking about people who are kind, honest, and principled, but perhaps fail to recognize that, as they say, discretion is the better part of of valor. So they get crosswise with someone higher up in the academic power structure.

My other guess is that people are frustrated by the constraints of the academic treadmill. I think there are two aspects of this. The first is geographical. The fact is, if you are really committed to pursuing a traditional academic career, you have to go to where the job is. This is hard not only on two-career families, but on anyone with other geographical constraints on where they live. Maybe you have children and are divorced, or maybe you have a chronic illness and need the support of family, or maybe you just really love where you live.

The other constraint of the academic treadmill is temporal. This has been much written about, so I won’t belabor it here, but it is well known that a gap in your trajectory (due to, e.g., illness or having a kid) can derail your career in a way that can be difficult to recover from. Academic life is also constraining in that it tends to be an all-consuming job. Many academics feel that they don’t have time for outside interests. A few are good at cordoning off and protecting their personal time, but the fact is, it is rare to see university professors who have the time to coach their kid’s soccer team.

Now, there are certain realms of science (like high-energy physics or virology) that really require the infrastructure provided by a university (or university equivalent). However, there are many domains where an individual scholar can still make significant contributions. I’m thinking of most fields in the arts and humanities, as well as theoretical or mathematical work in any of the sciences. Even in those aspects of science that incorporate an experimental or field component, there is a lot that an independent researcher can do, particularly if they have collaborators who are at a university.

Basically, one of the things that I would like the Ronin Institute to be able to do is help all of those people who want to engage in research, but who are not in the standard academic track. What I need to know from you is this: what would you need? Send me e-mail at jon@jonfwilkins.com with your thoughts.

Keep in mind, I am not sitting on a big pot of money, and will not, at any time in the near future, be in a position to provide support in the form of funding. The sort of thing that the Ronin Institute could potentially provide would be more along the lines of an institutional address (for e-mail or for running grants through), and perhaps a community of like-minded independent scholars. What I would like to get is a sense — in as much detail as you can muster — of where you’re coming from, where you want to get to, and what specific things you think might help that a community of Ronin could provide. Also, if the Ronin Institute were to acquire a modest amount of funding in the future, what would be most helpful to you as an independent scholar (e.g., funds to pay page charges for publications, funds to pay for IRB review of proposed research, funds to pay travel to scientific meetings, etc.).

In case you’re wondering, “Does this apply to me?” let me give you some guidelines. Here is who should write in:

  • Academics who have left their university positions (by choice or not), but want to continue with their work.
  • Academics who are fed up with the university politics/bureaucracy, and are interested in investigating an alternative model for research.
  • Aspiring academics who have taken a hiatus in their training (by choice or not), and are trying to figure out how to return.
  • Aspiring academics who are looking at the academic job market and despairing, and want to think about alternative paths.
  • People who love research and scholarship, but who, because of personal constraints (or personal preference) can’t commit to the full-time academic lifestyle.
  • People who are happily living as full-time academics, but want to connect with independent scholars.
  • People who are happily living as full-time academics, and have thoughts about what they would find most lacking if they were to leave the university.
Also, if you know of anyone who might benefit from something like this, or might have ideas or suggestions, please forward this post to them.
Once I have a sense of what people are looking for, I’ll try to find the intersection of that with the set of things that I believe to be tractable in the short to medium-term future.